Protein Info for Pf6N2E2_1336 in Pseudomonas fluorescens FW300-N2E2

Annotation: AraC family transcription regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 226 PF12833: HTH_18" amino acids 147 to 224 (78 residues), 65.4 bits, see alignment E=4.8e-22 PF00165: HTH_AraC" amino acids 185 to 223 (39 residues), 32.2 bits, see alignment 8.9e-12

Best Hits

KEGG orthology group: None (inferred from 87% identity to pba:PSEBR_a971)

Predicted SEED Role

"AraC family transcription regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZX38 at UniProt or InterPro

Protein Sequence (226 amino acids)

>Pf6N2E2_1336 AraC family transcription regulator (Pseudomonas fluorescens FW300-N2E2)
LQWDDREMRAGPQHLILMPAGRELGISNFPGPHGHYIADAVTFPLSTLRNFSSRYSQQIM
SRRGALKTDLCVPLDRHTTQAWNQLLASINANAPDALRTLYGEAVLLSLCLGGQIGPLLM
GRNDPICERVQQMVMGSPERDWTVASVAQQLNLGESTLRRQLANEGDSFRSILEGVRLAT
ALQWLQTTSRPIGEIAGACGYASASRFAVRFRSRYGLSPRELRATI