Protein Info for Pf6N2E2_1328 in Pseudomonas fluorescens FW300-N2E2

Annotation: Methyl-accepting chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 323 TIGR00229: PAS domain S-box protein" amino acids 142 to 241 (100 residues), 30.9 bits, see alignment E=1.3e-11 PF08447: PAS_3" amino acids 143 to 230 (88 residues), 69.4 bits, see alignment E=3.9e-23 PF13426: PAS_9" amino acids 143 to 236 (94 residues), 30.5 bits, see alignment E=5.5e-11 PF00015: MCPsignal" amino acids 231 to 318 (88 residues), 105 bits, see alignment E=6.4e-34

Best Hits

KEGG orthology group: None (inferred from 95% identity to pba:PSEBR_a2723)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZUU4 at UniProt or InterPro

Protein Sequence (323 amino acids)

>Pf6N2E2_1328 Methyl-accepting chemotaxis protein (Pseudomonas fluorescens FW300-N2E2)
MFLQTNKQRLALTAQVQRVLTGETEDTPQLDAYPQLRTVLEQHARQVASATAHLHQVEAQ
VQAQTLQWQHCEREMHRFRQQLEQALEREQALEVRLGEHRQQLQQQRQDAQIWELLQSTL
TEGCWDITVVNGDLQHPASGMRFSSQFRSLLGYGPDDLPDGWDAQVGITHPDDLPKIMAI
FDREILGSQGSGEYVFEYRMRHKTRDYIWCRERGRAVRDSHGQLVRVIGAVRDISDERSA
QSTHQRMLEQNQVTYAQIATVVGVIKGIADQTNLLALNAAIEAARAGDVGRGFSVVADEV
RKLAQSTRQATHQIQTMLHQHKQ