Protein Info for Pf6N2E2_1267 in Pseudomonas fluorescens FW300-N2E2

Annotation: Membrane protein, putative

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 259 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 80 to 102 (23 residues), see Phobius details amino acids 108 to 127 (20 residues), see Phobius details amino acids 149 to 173 (25 residues), see Phobius details amino acids 182 to 200 (19 residues), see Phobius details amino acids 206 to 224 (19 residues), see Phobius details amino acids 234 to 254 (21 residues), see Phobius details PF01925: TauE" amino acids 15 to 250 (236 residues), 170.2 bits, see alignment E=3e-54

Best Hits

KEGG orthology group: K07090, (no description) (inferred from 99% identity to pba:PSEBR_a2806)

Predicted SEED Role

"Membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZVS8 at UniProt or InterPro

Protein Sequence (259 amino acids)

>Pf6N2E2_1267 Membrane protein, putative (Pseudomonas fluorescens FW300-N2E2)
MPFELSVDLSTLAILAVVAFIAGFIDAIAGGGGLLTTPALLTAGLPPHLVLGTNKLSSTF
GSATASFTFYKRKLFHPRQWTHALVGTLVGALTGAIVAHYLPAEWLNKMLPVIVFACGLY
LLFGGTPKAPLDSDAPIKKTWQSPQGFSLGFYDGVAGPGTGAFWTVSSLLLYPIDLVKAS
GVARSMNFVSNIAALSVFIFSGQVDWVIGLSMGLSVMIGAFFGARTAISGGAKFIRPVFI
TVVLGLTVRLAWQHWFSVA