Protein Info for Pf6N2E2_1249 in Pseudomonas fluorescens FW300-N2E2

Annotation: Transcriptional regulator, AraC family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 307 PF00165: HTH_AraC" amino acids 206 to 247 (42 residues), 38.7 bits, see alignment 8.1e-14 amino acids 264 to 295 (32 residues), 32.5 bits, see alignment 7.3e-12 PF12833: HTH_18" amino acids 219 to 297 (79 residues), 81.2 bits, see alignment E=5.7e-27

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZWW3 at UniProt or InterPro

Protein Sequence (307 amino acids)

>Pf6N2E2_1249 Transcriptional regulator, AraC family (Pseudomonas fluorescens FW300-N2E2)
MPLLRYKLEKYSSSGLLLSSADRNWNGLVAEVRSHSDGVIAKNTRQPTTELVFDARGDSG
SVVTRKAYDVIEQTPTRRGMAWICPKGIQEDLVLLSACMPDLLHVHLGAEHFSAEALGEC
FDGSEYLTMRFERGFEDDLIASISNAILLELKNSTPSGKLLVESLACSAAARLIQRFTSA
MPSRLASLERVPNAGVKRIRQVMDYIEDNIESNISLDDLAAVAYLSRFHFARSFKSATGK
TPQRYVNERRMERAKYLLTHSTHSIAEVAMILSFSSQATFSRAFHQHTGKTPNEFARESR
AWRQNLS