Protein Info for Pf6N2E2_1237 in Pseudomonas fluorescens FW300-N2E2

Annotation: Putative transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 487 signal peptide" amino acids 1 to 52 (52 residues), see Phobius details transmembrane" amino acids 63 to 80 (18 residues), see Phobius details amino acids 91 to 114 (24 residues), see Phobius details amino acids 120 to 138 (19 residues), see Phobius details amino acids 150 to 172 (23 residues), see Phobius details amino acids 179 to 199 (21 residues), see Phobius details amino acids 211 to 231 (21 residues), see Phobius details amino acids 238 to 258 (21 residues), see Phobius details amino acids 279 to 303 (25 residues), see Phobius details amino acids 309 to 333 (25 residues), see Phobius details amino acids 345 to 363 (19 residues), see Phobius details amino acids 369 to 386 (18 residues), see Phobius details amino acids 415 to 434 (20 residues), see Phobius details amino acids 449 to 469 (21 residues), see Phobius details PF05977: MFS_3" amino acids 27 to 185 (159 residues), 39.2 bits, see alignment E=4.9e-14 PF07690: MFS_1" amino acids 29 to 421 (393 residues), 190.4 bits, see alignment E=6.6e-60 PF00083: Sugar_tr" amino acids 58 to 194 (137 residues), 40 bits, see alignment E=3.6e-14

Best Hits

KEGG orthology group: None (inferred from 93% identity to pba:PSEBR_a2819)

Predicted SEED Role

"Putative transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZTC1 at UniProt or InterPro

Protein Sequence (487 amino acids)

>Pf6N2E2_1237 Putative transport protein (Pseudomonas fluorescens FW300-N2E2)
MKPVNTQQNRPATAPAHRLFSPRWALASLALSTLLASLGASVAAVALPTLAEALGASFQQ
VQWVVLAYLLAITTLIVSVGRLGDLMGRRKLLLAGIALFTLASAVCGLAPSLWLLVAGRA
LQGLGAAIMMALTLALVGETVDQEKTGSAMGLLATLSAVGTALGPSFGGMLISGFGWPAL
FLVNIPLGLLTLGLAWYSLPVREVPPKPEGTRFDVTGTLLLAVTLATYALSMTSGRGSFG
GLNLALLLIALVGGGLFIRAQSRAVSPLIPLKVFRDRSLVSGLVTSALVATVMMATLLVG
PFYLSITLALPAAFVGLALAVGPSVAALAGVPAGRLVDRFGVHPMRVAGLANMVLGCLML
SLVPPTLGTVGYLAAIVVTTLGYAFFQTANNTAVMADVAAQRRGVIAGLLNLSRNLGFFT
GASVLGAVFAAAAATNDITGASPAAVTNGLHMTFAVALAMVILALFIAWKSRVPEPLPKP
RDNPSQA