Protein Info for Pf6N2E2_1225 in Pseudomonas fluorescens FW300-N2E2

Annotation: DinG family ATP-dependent helicase CPE1197

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 770 PF00270: DEAD" amino acids 196 to 277 (82 residues), 28.7 bits, see alignment E=1.5e-10 PF06733: DEAD_2" amino acids 274 to 395 (122 residues), 49 bits, see alignment E=8.6e-17 PF13307: Helicase_C_2" amino acids 591 to 753 (163 residues), 139.3 bits, see alignment E=2e-44

Best Hits

KEGG orthology group: None (inferred from 96% identity to pba:PSEBR_a2830)

Predicted SEED Role

"DinG family ATP-dependent helicase CPE1197" in subsystem DNA repair, bacterial DinG and relatives

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165ZV51 at UniProt or InterPro

Protein Sequence (770 amino acids)

>Pf6N2E2_1225 DinG family ATP-dependent helicase CPE1197 (Pseudomonas fluorescens FW300-N2E2)
MTPASRYSIAVRALCEFTAKVGDLDLRFTPSPTALEGIAGHRTVASRRSEGYQAEVALEG
HYQALTVKGRADGYDPTRNCLEEVKTYRGDLSKQPANHRQLHWAQAKIYGWLMCQKLQLP
HIDVALVYFDIVSEKETCFTQSFEAAQLQAFFEAQCALFLAWAEQEMAHRQARNLGAHTL
AFPHASFRPGQRHLAESVFKAVSTGRCLMAQAPTGIGKTVGTLFPMLKALAPQRLDKVFF
LTAKTPGRKLALDAAQVITRSAPSMPLRVLEMIARDKACEHPDKACHGESCPLARGFYDR
LPGARAAASQVTLLDQAALREIALAHEVCPYYLSQEMARWADVVVADYNYYFDFSALLFG
LAQANGWTVATLVDEAHNLVERGRQMYSATLDQATLTSVRKTAPEPLKKSLDRVNRQWNA
LHAPQVAAYRAYEKLPDKLLQALATCTTAIGDYLNDHPQGLDSGLQAFYFDALQFGRVAE
TFDEHFLFDIHKRELGRQRSLSTLCLRNVVPAAFLRPRLTAARSTVLFSATLSPRHYYAD
LLGTPGDTVWIDVESPFKAEQLDVQVVSRISTRFAHRQASLEPIAALMARQFNERPGNYL
AFFSSFDYLQQVAGLFAERYPQIALWTQSRGMGEAPRQAFLERFMEHSQGIGFAVLGGAF
GEGIDLPGSRLIGAFIATLGLAQFNPVNEQMKQRMAAIFGDGYDYTYLYPGLQKVVQAAG
RVIRTQQDRGVVMLIDDRFGEARVQHLLPRWWSITQEAHKVEGSRIFPGA