Protein Info for Pf6N2E2_119 in Pseudomonas fluorescens FW300-N2E2

Annotation: Glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 367 transmembrane" amino acids 95 to 115 (21 residues), see Phobius details PF13579: Glyco_trans_4_4" amino acids 68 to 170 (103 residues), 40.7 bits, see alignment E=9.9e-14 PF13439: Glyco_transf_4" amino acids 69 to 171 (103 residues), 48.1 bits, see alignment E=4.2e-16 PF20706: GT4-conflict" amino acids 132 to 310 (179 residues), 32.5 bits, see alignment E=1.4e-11 PF00534: Glycos_transf_1" amino acids 181 to 339 (159 residues), 119.8 bits, see alignment E=2.7e-38 PF13692: Glyco_trans_1_4" amino acids 188 to 325 (138 residues), 108.6 bits, see alignment E=9.2e-35 PF13524: Glyco_trans_1_2" amino acids 269 to 352 (84 residues), 29.2 bits, see alignment E=2.6e-10

Best Hits

KEGG orthology group: None (inferred from 98% identity to pba:PSEBR_a3753)

Predicted SEED Role

"Glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165YJP2 at UniProt or InterPro

Protein Sequence (367 amino acids)

>Pf6N2E2_119 Glycosyltransferase (Pseudomonas fluorescens FW300-N2E2)
LNAPFGPTRHSSPLSIIHLLDSGGFYGAERMLLDHCLATPGQHQVLFLAAPPTLIKRFRQ
AGVDCRHCASWAELLQHLRQRRDERPLINTHNFKGLLFGWSAATLLGLPLVITQHGFTPR
SPKQRFYTWLSLQLCRTASVKRVVCVAESIATLHRRASVQAEKLDVIPNGLPAASTPLAH
RADKQRWRVGYVGRLSSEKGPDLFLDAMIPLCQKHASLHAVMLGDGPERQALLKRITDAG
LPTRIELPGYQTDMNAWWSRLDALVISSRTEGTPMILLEAMQAGVPVVAFGVGGIPDVLQ
DRHNGLLAAPANSAELAAQIETLFSEPHLARILADNARRTQRDRYDLRTLAECWSQLYIR
TAREARS