Protein Info for Pf6N2E2_1097 in Pseudomonas fluorescens FW300-N2E2

Annotation: Translation initiation inhibitor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 116 PF01042: Ribonuc_L-PSP" amino acids 4 to 116 (113 residues), 75.2 bits, see alignment E=2.3e-25

Best Hits

Swiss-Prot: 37% identical to Y322_HAEDU: RutC family protein HD_0322 (HD_0322) from Haemophilus ducreyi (strain 35000HP / ATCC 700724)

KEGG orthology group: None (inferred from 92% identity to pba:PSEBR_a2982)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165YYW2 at UniProt or InterPro

Protein Sequence (116 amino acids)

>Pf6N2E2_1097 Translation initiation inhibitor (Pseudomonas fluorescens FW300-N2E2)
MSIQRIESNPRLSRSVVHNSVAWLSGVVAADCSQDIEGQTRQVLQRIDELLAASGSDKHR
LLNVQIWMKDMGRDFAAMNALWSEWLNATQAPARATAQVAFDDPEILLELIVTAAV