Protein Info for Pf6N2E2_1088 in Pseudomonas fluorescens FW300-N2E2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1610 PF20178: DUF6543" amino acids 808 to 1033 (226 residues), 84 bits, see alignment E=6.7e-28

Best Hits

KEGG orthology group: None (inferred from 94% identity to pba:PSEBR_a2991)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZUV8 at UniProt or InterPro

Protein Sequence (1610 amino acids)

>Pf6N2E2_1088 hypothetical protein (Pseudomonas fluorescens FW300-N2E2)
MLTETTPLLFPEVLHAHRLDELTATHGLTQADLDWLQHIALPDHTQRAAQTPPMLAETIL
LQADEKPPIALAGCFVLSASSNSSKTSTHPAFLYTPSGGIKKFDNLASLDEQIDQMRRDT
AQRDDLFRLLSISQRSELNSTTDIRQTRQLIEEDVFKTQLESIEHAQRLNALAMVNELIK
LPSLRSMLDQVLNEALPDLDHRQIRVAFSKGAYPGNPRAIQVTESLPLSDAILGYFHHQG
WPVGHDIDLTHPGTPASSYSPQRWENIIKDIARKLIPTLIGCIDAFWENTTTHFYMSRRK
LLSQVIHDRLWATILVEREKRQLTEEQSRELLRLFRPSRRDETLLFIETIRLWEYEPHFV
ELAGSLMISAKGNYLYTPMQGLQKIDNPPGFKAALFGNPASTAQKEALYSLLSLEERNRF
LRFDEPQISGKPLDLPVPESLANAIIEKQKNNFHYALEMSRQGDVDIHALIDKALDIRTF
INKSLLDPPTAGHWGTHPAFHGSLRPSNFMADQMQRKVKSYTDVEAAFDSLFTRLPTSHN
VSLHNGLRQLLAELTNVFSLGIRAEAELRALNASLPSIANDLIRTVFAYDSEYPDRAQRI
GVRGFRPDVYSLTLACSEEDRTVYLPLANCFLLTERGGLDTPYSGMAILWTPADGLQAFS
SVDVATQQLNRHLLDSRKRFGLLANLTPAQRQPHGRYQLQAYELIEDNVLVNRMSSFIKH
FEAEHAYLSTLKAGSWQLTGKALSRSLQALLDKGAPTNLKRATHIARANKQQQQLPAWLG
TAALDDQRLHVELLEQYKNSVVDGKDYLDGIEPLRTYVRNKLKALLSARFAANNLDPDTL
QITPNLAIVGPASSLTDFAMHHIEVTREGFKVSSTSTQKLPDGLNEITVRQMLSSLNIST
DFKNQVAQKLSGPTAQARQRKTAFRQQMPWQLLQYAHARYLQQHLSPLAFDLIRQVVDMP
DAVARKAVEGANAFIRPLELIKTGGAVPVKAQGLYLIGSSVDATSPQVLYSPYHEGEHFT
EFKDEASVIAAFNTPGILQNLLIRRLPEHQQATFRHLFAATVGQRSEITLASNPIQTNLF
DTLFDDNAALLSDMLSAQTNEKRQFDWETVLHLFSSGIKSVGRQLSGKLTFIETLWESYQ
DFKTSAEALQQHDWKTGLHDFIAGAAEMVSLGLMNREDTFGLLDPIEPLSQGATLANRWK
DIASTARIRTDLSVFEAMGISLSDLQPDLIDGTYKALENGRLYIPLAGKVFQVAKAGQTW
RIVHEHAEGPLLRKSPDDRTWELDPQRQTIRFGKAGSKMAVTYSDFKAKGSLNIEAKGMA
EIRRKYPHRANAIVQALETARFYSFNALHNLAQFKRQPLAGSRLDNFMRLFFGVDSVDAR
LISKIETAISPICRALADPSWAQQNADRIVIGNLKHMEDRATAFVLEPAAVGRIYITQFF
FDMGLDWYKAVVPEFFNVDAHAQGATLIHEISHQLFNTFDIIYLDAALPFLDLISTATYA
GKLRYDEQRDLQLNGLSLTTPKSKLFTQWDSTDNTYKKLELLPGYSQITREILKITGART
MDNARDDFLDSILPDKRIDVILRNADSLTLLICELGRQLDPTPPRKTTVP