Protein Info for Pf6N2E2_1069 in Pseudomonas fluorescens FW300-N2E2

Annotation: autotransporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 791 PF18883: AC_1" amino acids 306 to 418 (113 residues), 98.8 bits, see alignment E=2e-32 TIGR01414: outer membrane autotransporter barrel domain" amino acids 324 to 791 (468 residues), 239.7 bits, see alignment E=3.2e-75 PF03797: Autotransporter" amino acids 521 to 768 (248 residues), 141.9 bits, see alignment E=3.3e-45

Best Hits

KEGG orthology group: None (inferred from 86% identity to pba:PSEBR_a3013)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZWN1 at UniProt or InterPro

Protein Sequence (791 amino acids)

>Pf6N2E2_1069 autotransporter (Pseudomonas fluorescens FW300-N2E2)
MAACTLTPTAGDDAYVCDSGTSPGLTDLSGNNSLTMPANGSGVISGDVTFGAGVDRIVIN
ANGLIDGDVQQGSGVDDFIMNGGRILSLAQGDGLDTFLMTGGTIVDAFEDGDVAQMTGGT
IGRVDMKLDDNVFDMSGGQIIGNLVTGFGQDTISLSAGRIGGNVSVSGGNDSITVSGGEI
LGEVRASAGDDQLQWSGGLIHSAILMGDGSDTALLSNLDETGLSITPSVNGGLGQDVLTF
EGSTSSTGARYLNWETVNLTQGSQLDLNDTLTLGDSATGTGTLNIESGSTLTATQGVVAP
FTAGQLATLNNAGTIDLTQGNTRTIDTLTVQGNYVGDNGQLHVQTAIGADGSASDKLVVN
GGTLTGNTAITVTNLGGTGALTTQDGIEVVQAQGGAVSNIDAFSLAQSVSAGAFDYRLFK
GGVTGNQNNWYLRSTVVAGPVAAPIPTAPPAPGAPPVPTLPPLPTAVPGAAPIPLYRPEV
PTWSVLPPAAAQLTLMALGTFHDRQGDQRLLTETGAFGAGWGRVYGVDLDKTWAGTVTPQ
FDGSIKGFQVGNDLYSSLLSGGQTQRIGFFVGHTELNGNVKGFNLGFEGRHAGKIELDGD
SYGLYWTLTDPNGGYVDTVVMGTRLNGDNRSERGLKIDNRGHALTASAETGYPFKVTADW
DFEPQAQIIYQKVSLDTQNDGVSKVEFDSDGAWTGRLGARLKGRYQVSGMPVEPYLRANL
WHTFSGTDSVIFDDTERVETQQRASTGDLGIGVTVSLAPSVAMYAGANYSQNLDSNQQHS
VMGNVGLRISW