Protein Info for Pf6N2E2_1006 in Pseudomonas fluorescens FW300-N2E2

Annotation: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 177 PF13407: Peripla_BP_4" amino acids 1 to 147 (147 residues), 107.2 bits, see alignment E=1.7e-34 PF13377: Peripla_BP_3" amino acids 15 to 165 (151 residues), 38.3 bits, see alignment E=2.4e-13 PF00532: Peripla_BP_1" amino acids 15 to 158 (144 residues), 24.8 bits, see alignment E=2.2e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (177 amino acids)

>Pf6N2E2_1006 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) (Pseudomonas fluorescens FW300-N2E2)
MGDWVVKNLPTGANVVLITGQIGSTTAMDRAKGVHQSLTAAGSKFKLVAEQSGEADRAKA
MSVVENILTASAGNPPDVIICSTGDMTLGAVEAVRGMGLSDKIKIIGYDAYPEVLKSIKA
GEITGIVEQSPSKQIRTALRLAVENIRNGTKIESVTITPFMVTRENLDQAEQFSAIK