Protein Info for Pf6N2E2_1000 in Pseudomonas fluorescens FW300-N2E2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 127 PF14534: DUF4440" amino acids 11 to 117 (107 residues), 59.2 bits, see alignment E=7.5e-20 PF13474: SnoaL_3" amino acids 16 to 120 (105 residues), 27.8 bits, see alignment E=4.1e-10 PF12680: SnoaL_2" amino acids 19 to 116 (98 residues), 28.4 bits, see alignment E=3.1e-10

Best Hits

KEGG orthology group: None (inferred from 58% identity to rha:RHA1_ro08509)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZSH1 at UniProt or InterPro

Protein Sequence (127 amino acids)

>Pf6N2E2_1000 hypothetical protein (Pseudomonas fluorescens FW300-N2E2)
MKNHNAVEELIRELESKRYEAIIAGDYIAFKAYAHPDLSYAHSTGVVDTLESYLDKCLGG
FYVYHHIEHPIESIKVVGDIALVFGEMNGEITAGGVQKTLRNKALAVWEQRDGEWKLLAY
QPTPIPT