Protein Info for Pf1N1B4_954 in Pseudomonas fluorescens FW300-N1B4

Annotation: LppC putative lipoprotein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 603 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF04348: LppC" amino acids 33 to 593 (561 residues), 647.8 bits, see alignment E=1.6e-198 PF13458: Peripla_BP_6" amino acids 251 to 416 (166 residues), 33.3 bits, see alignment E=4.4e-12

Best Hits

KEGG orthology group: K07121, (no description) (inferred from 90% identity to pfo:Pfl01_4684)

Predicted SEED Role

"LppC putative lipoprotein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A162ARW1 at UniProt or InterPro

Protein Sequence (603 amino acids)

>Pf1N1B4_954 LppC putative lipoprotein (Pseudomonas fluorescens FW300-N1B4)
MIACLRLFTALCLAALLAACASSPSSSLGELPRTPDASIEQLLEQATRSKDPEKAALLRL
SAADLAYRQGNAGQSAQILQQVPVEQLKPGQQVFANTLAAELAMTRNQPKAALTALSHPS
LQRLNELPVEQQVRTGTVHARALEADGQTLAAARERIFIAPMLEGEAASKNHEAIWTLIA
SLPTDQLQPTTDDDLGGWIRLALVVKTAGTLEQQQAAIDNWREQNPKHPAAVQLPLPLTK
LKELASQPLSKIALLLPQDGPLGPVGKALREGFMAAHYQAQQAGQKPPAIEFYDSSRLTS
LDDFYRKAQADGVQLVVGPLEKPLVKQLSARAQLPITTLALNYSEGAQGPAQLFQFGLAA
EDEAREVSRRARADGLHRAAIMVPKGEWGDRVLRAFSQDWQANGGSIVATERVDQPVQLA
QQIADMFQLRQSEGRAKSLQSTVGSQVAAQPSRRQDIEFIFLAATPQQAQQIKPTLNFQY
AGDVPVYATSHVFSASGDQNQYNDMNGIRFCETPWLLDANDPLRKQVTAQWPQAGGSLGR
LYAMGVDAYRLAPRLGQLKALPDSRIQGQSGSLGMTQNQRVERQLPWAEFANGQVQRLPD
TSR