Protein Info for Pf1N1B4_935 in Pseudomonas fluorescens FW300-N1B4

Annotation: Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1030 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 339 to 357 (19 residues), see Phobius details amino acids 364 to 385 (22 residues), see Phobius details amino acids 391 to 414 (24 residues), see Phobius details amino acids 435 to 455 (21 residues), see Phobius details amino acids 468 to 493 (26 residues), see Phobius details amino acids 525 to 544 (20 residues), see Phobius details amino acids 856 to 874 (19 residues), see Phobius details amino acids 881 to 900 (20 residues), see Phobius details amino acids 906 to 928 (23 residues), see Phobius details amino acids 956 to 975 (20 residues), see Phobius details amino acids 986 to 1011 (26 residues), see Phobius details PF00873: ACR_tran" amino acids 9 to 1011 (1003 residues), 983.7 bits, see alignment E=1.5e-299 PF03176: MMPL" amino acids 300 to 497 (198 residues), 35.5 bits, see alignment E=8.8e-13

Best Hits

KEGG orthology group: K03296, hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family (inferred from 91% identity to pfo:Pfl01_4662)

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166MXC1 at UniProt or InterPro

Protein Sequence (1030 amino acids)

>Pf1N1B4_935 Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA (Pseudomonas fluorescens FW300-N1B4)
MKGHGSVSAWCIDHPVATVLLTFALVLLGVIAFPRLSIAPLPEAEFPTIQVAAQLPGANP
ETMASSVATPLEVQFSAIPGVTQMTSSSALGSTILTLQFTLDKSIDTAAQEVQAAINTAA
GKLPKDMPNLPNWRKVNPADSPVLILSINSPQMPGTEVSDLVETLLARQISQIDGVGNIN
ITGQQRPAIRVQASADKLAAIGLTLADIRLAIQQTSLNLAKGALYGESSISTLSTNDQLF
HPQEYGQLIVSYKDGAPVHLKDVAKVVNGSEDAYIQAWADGQPGVNLVIFRQPGANIVET
VDRIQAALPTLEAMLPASVQVKVLIDRTQTIRASLHEVEVTLLIAILLVVAVMALFLRQL
SATLIVASVLGVSLIASFALMYIMGFSLNNLTLVAIVVSVGFVVDDAIVVVENIHRHLEA
GDGMREAAIKGAGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATSTIMISVV
VSLTLAPTLAALFMRAPEHSQSGFGERLLALYEKGLRRALAHQKLMIGVFGLSLGLAVAG
YIFIPKGFFPVQDTGFVLGTTEAAADISYGDMVKKHLAMAEIVAADPAVETFSHSVGVAG
SNQTIANGRFWISLKKRGDRDVSASQFIDRIRPQLMKVPGIVLYLRAGQDINLSSGPSRA
QYQYVLKSNDGPLLSTWTQRLTEKLRGNLAFRDISNDLQLGGSITHISIDRSAAARFGLT
ASDVDEALYDAFGQRQINEFQTQTNQYNVILELDTKQRGKAESLNYFYLRSPLSGEMVPL
SALAKFDAPTIGPLSIAHDGMFPAANLSFNLAPGVALGDAVIMLNQAKTDIGMPVAISGN
FQGAAQAFQSSLASQPWLILAALVAVYIILGVLYESFVHPLTIISTLPSAGLGAVIMLWI
CGQDFSIMALIGLVLLIGIVKKNGILMIDFALDAQRNRGLPPEEAIYEACMTRFRPIIMT
TLAALLGALPLMLGYGTGAELRQPLGIAVVGGLLVSQALTLFTTPVIYLWLERLFHRPKP
APLQAMATTD