Protein Info for Pf1N1B4_934 in Pseudomonas fluorescens FW300-N1B4

Annotation: Probable Co/Zn/Cd efflux system membrane fusion protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 386 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details TIGR01730: efflux transporter, RND family, MFP subunit" amino acids 41 to 372 (332 residues), 241 bits, see alignment E=7.8e-76 PF13533: Biotin_lipoyl_2" amino acids 66 to 113 (48 residues), 54.1 bits, see alignment 1.6e-18 PF16576: HlyD_D23" amino acids 67 to 293 (227 residues), 43.8 bits, see alignment E=2.8e-15 PF13437: HlyD_3" amino acids 177 to 288 (112 residues), 29.2 bits, see alignment E=1.9e-10

Best Hits

KEGG orthology group: None (inferred from 90% identity to pfo:Pfl01_4661)

Predicted SEED Role

"Probable Co/Zn/Cd efflux system membrane fusion protein" in subsystem Cobalt-zinc-cadmium resistance

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166MXB2 at UniProt or InterPro

Protein Sequence (386 amino acids)

>Pf1N1B4_934 Probable Co/Zn/Cd efflux system membrane fusion protein (Pseudomonas fluorescens FW300-N1B4)
MRIHKKNALFAALLITLAALGVWYAAKPATTKLTTSTAIPVRVVSVTEKDVPRYISGIGS
VLSLHSVVVRPQIDGILTKLLVKEGQLVNKGDLLATIDDRSIRASLDQARAQLGESQAQL
QVAQVNLKRYKLLSVDDGVSKQTYDQQQALVNQLKATAQGNQASIDAALVQLSYTQIRSP
VTGRVGIRTVDEGNFLRMTDTQGLFTVTQIDPIAVEFSLPQHLLPTLQGLINDPQHTPVK
AYIGADTDGETGNLLGEGRLTLIDNQINANTGTIRAKAEFANPAQKLWPGLLVTVKIQTA
LDKNALVVPPTVVQRGLDQHFVYRVNGDKVEAVQVQMVYQGSGQDLIKGVKPGDVLVSDG
QSRLKPGSTVQVVTDPPQMVQSEPKP