Protein Info for Pf1N1B4_855 in Pseudomonas fluorescens FW300-N1B4

Annotation: FIG021952: putative membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 346 transmembrane" amino acids 112 to 133 (22 residues), see Phobius details PF12844: HTH_19" amino acids 17 to 82 (66 residues), 36.9 bits, see alignment E=7.8e-13 PF13413: HTH_25" amino acids 19 to 77 (59 residues), 72.1 bits, see alignment E=6.7e-24 PF01381: HTH_3" amino acids 20 to 51 (32 residues), 24.9 bits, see alignment (E = 4.2e-09) PF13464: RodZ_C" amino acids 272 to 343 (72 residues), 89.8 bits, see alignment E=2.3e-29

Best Hits

KEGG orthology group: None (inferred from 82% identity to pfo:Pfl01_4602)

Predicted SEED Role

"FIG021952: putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166MVK9 at UniProt or InterPro

Protein Sequence (346 amino acids)

>Pf1N1B4_855 FIG021952: putative membrane protein (Pseudomonas fluorescens FW300-N1B4)
MKAAHPEVVAANRVNPGETLRQARESNGWSLAEVALKLNLTINSLSNLEAGAFDKLPGHT
FARGYIRAYAKLLGMDQTVLVQQFDQSTGTDSQGSNVHSLGRIEEPVRVSHTILRIVSLL
LLLAVIGGGFIWWQDQTSLRTKDLIGLAPEHVEVEGADGTTQIHPLDEPEDQAVAQGQAE
GETPLALPQAESSTEEPVNAETSAPVPAPVVSAVTPAAAAHSTAPAVATPATPATPAPAV
PAVPAPVISAPIAPTAPAPAPAAPVAGQGQVQLQFTADCWTQVTDGTGKVLLSGLKRKGE
NVSVSGKPPFSVRLGFARGAQVSYNGQVVDVAPFTSGETARLKLGQ