Protein Info for Pf1N1B4_852 in Pseudomonas fluorescens FW300-N1B4

Annotation: Mlr7403 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 213 transmembrane" amino acids 22 to 40 (19 residues), see Phobius details PF09976: TPR_21" amino acids 13 to 209 (197 residues), 196 bits, see alignment E=5.7e-62

Best Hits

KEGG orthology group: None (inferred from 94% identity to pfo:Pfl01_4599)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166MVJ7 at UniProt or InterPro

Protein Sequence (213 amino acids)

>Pf1N1B4_852 Mlr7403 protein (Pseudomonas fluorescens FW300-N1B4)
VSSTEDEHLAELKDWWTRNGKPLVTGGLLALVIVFGWQAFQKYQSNQSQGASILYQQLLE
TTLTPDGKPDAARVSDLAGKLNSEFGGTAYAQYGSLFVAKVAVDSGKLDDAASELKAIVA
KPANPALGEIARQRLAQVLAAQNKVDEALKLLEGDADKAFLATREELKGDLLVQLGRTDE
ANTAYQKAKAALSDEAAVGGLQIKLDDLAKGDA