Protein Info for Pf1N1B4_82 in Pseudomonas fluorescens FW300-N1B4

Annotation: Mobile element protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 313 PF01548: DEDD_Tnp_IS110" amino acids 10 to 147 (138 residues), 77.3 bits, see alignment E=1.2e-25 PF02371: Transposase_20" amino acids 196 to 273 (78 residues), 57.8 bits, see alignment E=1.1e-19

Best Hits

KEGG orthology group: None (inferred from 60% identity to pfv:Psefu_0946)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166MEY3 at UniProt or InterPro

Protein Sequence (313 amino acids)

>Pf1N1B4_82 Mobile element protein (Pseudomonas fluorescens FW300-N1B4)
MPVSLSKPIVGVDVAKNELVIYQSGGDLLEEIPNTRTSIKQWLKALSGTVAIAIEATNIY
HLDFADLAYEAGCTIYMVGGYELKHYREGVKIRAKTDALDAKLLARYLKNEAEELRPWTP
PSPLYRQLLSLFRRRAALVQARVGLVQSWSNEPLLKAAFAEQVKSMQQLETLIEKTINDQ
LKEAGLLGQLKRCLKVECIGFLTGARLITAFQRGDFRNADAFIAFLGMDLRVAKSGQKDA
RRSLTKRGDPEARRLLHNAAMSASRTKAWKGYYEEQRTRGFSTTQALVMLARKLARVVFA
LLKGQSEYQPKAS