Protein Info for Pf1N1B4_806 in Pseudomonas fluorescens FW300-N1B4

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 589 PF14496: NEL" amino acids 281 to 491 (211 residues), 168.9 bits, see alignment E=1.2e-53

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (589 amino acids)

>Pf1N1B4_806 hypothetical protein (Pseudomonas fluorescens FW300-N1B4)
VWPNPLDFRDGGGIHISERLIECFERQGLAFDERSLHPHGGYRLDLSVELGSVNLETWWK
KKPDLKRFLDKVSVLNLDNTHFSSEPGGLLKDFAHLDELSARGCELTEIPQGITAMHVLS
TLRLNNNHIRLTAQSVEQLSRLTYLKTLRLDHNPLGALPDIGRMPGLMIVSLRDTGIHTW
PRGTFAKPRPRGFFLDLQDNPLARIPDVLPGSNDAFVVARTRLNAQALSDVNRLDYENLR
RSVGLSPRHAYPPATNNDLAFWPVTDDSEWWTSSPGLGRYRGEAWSDLADEPDSAGFFTV
IRGLTLSADYRAGGKFRIELAKRVWRMIDAADMDAEVRNRLFTMASSPVNCADAGAQLFN
NMGLEVLASEARSLSTSPQMLERQLVTLARSAARLDHVNEIARADMQERMASGLTPDEVE
VYLAYQTGLARRLDLPWQSRSMLYRPLAGVSESMIDQAYGAVLSLEYGDGLVNKMLEQRF
WVEYLRATHPRAFEENTELYAVVKAGLLADLRQTQNERAHTLHRTDEYKNQLGEKLKELA
RQLPVPESVVFTGKEMTDEVYNRLINDLFDDEKELARRLTRMALRMAGH