Protein Info for Pf1N1B4_803 in Pseudomonas fluorescens FW300-N1B4

Annotation: Membrane carboxypeptidase (penicillin-binding protein)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 804 PF00905: Transpeptidase" amino acids 601 to 704 (104 residues), 23.8 bits, see alignment E=1.2e-09

Best Hits

Predicted SEED Role

"Membrane carboxypeptidase (penicillin-binding protein)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (804 amino acids)

>Pf1N1B4_803 Membrane carboxypeptidase (penicillin-binding protein) (Pseudomonas fluorescens FW300-N1B4)
VSGAEKIRQMISASVRAYQAGPETLQARQNVIRDYLNSVPLSAVPGHGEVHGMAEGLRVW
YGADFNKANERLASTDTDPKSLSEKGLALREMLSLMIAQRRPSHYLTKGRDELASLTDSH
IRLLSQNGVIDAPLATAALASKVTYRDWATQPTIQPIETNKGISVARSRLAGLLNRPLYD
LDRLDLSATSTLQGELQTQATAYLKHLADPTYAAEIGLIGERLLTPTNTAQVRYSFTLFE
LTPDGSRVRVQTDSTDQPFDINEGSKLELGSTAKMRVLTTYLQIMAELHDRYASMSVAEL
KKTEVADPDRLTRWAVDYMIQNTDRSLPKMLGAALDRKYSASPGEAFFTGGGLHTFVNFR
KEDNGRLPTLRDALRESINLPFIRLMRDLVRYSTYSGPNSSAELLKDDRDPRRQEYLASF
ADKEGTSFLLKFWKKYRNKDTQARLETFLDGMRPTPIRMAAVHRYLFPQADQEDFNTFVR
SHLKGAKLQEKLTDERLERLYLSYGPGSYDLPDQGFIAKVHPLDLWLIGYLLNNPDAKFS
QIVKASQFERQEVYSWLFKSRHKGARDSRIRTMLEIEAFLDIHQRWQKVGYPFDHLVPSL
ATAIGSSGDRPAALAELIGTILNDGVRMPTLRIDSLHFAADTPYETRLVNNPMVGKRVMP
SEVAAAMREALSQVVDAGTAKRLAGSFKLNDGSPLAMGGKTGTGDNRIEAIGSGGRILSS
KSINRTATFVFYIGDKHFGTLTAYVPGRTAENFKFTSALPAQVLKGMAPILSPYLQPGTQ
TLCHAGTGLPIVTQATAAPGTSAR