Protein Info for Pf1N1B4_800 in Pseudomonas fluorescens FW300-N1B4

Annotation: OpgC protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 374 transmembrane" amino acids 12 to 25 (14 residues), see Phobius details amino acids 39 to 59 (21 residues), see Phobius details amino acids 80 to 100 (21 residues), see Phobius details amino acids 142 to 160 (19 residues), see Phobius details amino acids 165 to 184 (20 residues), see Phobius details amino acids 191 to 211 (21 residues), see Phobius details amino acids 228 to 248 (21 residues), see Phobius details amino acids 274 to 292 (19 residues), see Phobius details amino acids 312 to 332 (21 residues), see Phobius details amino acids 339 to 359 (21 residues), see Phobius details PF10129: OpgC_C" amino acids 5 to 362 (358 residues), 381.6 bits, see alignment E=1.7e-118

Best Hits

KEGG orthology group: None (inferred from 72% identity to pfs:PFLU1105)

Predicted SEED Role

"OpgC protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161YZB5 at UniProt or InterPro

Protein Sequence (374 amino acids)

>Pf1N1B4_800 OpgC protein (Pseudomonas fluorescens FW300-N1B4)
MTFERDHRIDFFRGLALIFIFWDHVPQNPLAQFTVRNFGFSDAAEIFVFLAGYAAVLAYG
KIARRDGFMVATVKILRRAWVLYVVHIFLLALLMGIVFFANSHVETRDLVQEMGLQYFLS
NPQQALMDELLLRFKPNLMDPLPLYILLLLGLPLVLPMLLRKPEYVVGLSVVVYLLAPWL
QWNLAGTDGGVWFFNPMAWQLLFILGGATAIHGQRPRAPQPRPLIRQPVFIAALTYLLLT
GLIAVSWKWPTVHEVFMPQTLGEWLYPISKTNLSPARLLHFLALAYVTARLLPDNGWTQH
WLAQQSCRMGRYSLEVFCFGVLLAPLADMLNALGANALAMQVFSAMLGVGLMVLLGAWLD
FNKRLNRSMVVSVA