Protein Info for Pf1N1B4_794 in Pseudomonas fluorescens FW300-N1B4

Annotation: Signal transduction histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 467 PF00072: Response_reg" amino acids 63 to 150 (88 residues), 31.9 bits, see alignment E=2e-11 PF02518: HATPase_c" amino acids 356 to 462 (107 residues), 95.6 bits, see alignment E=3.9e-31

Best Hits

KEGG orthology group: None (inferred from 79% identity to pba:PSEBR_a4516)

Predicted SEED Role

"Signal transduction histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A162BIQ4 at UniProt or InterPro

Protein Sequence (467 amino acids)

>Pf1N1B4_794 Signal transduction histidine kinase (Pseudomonas fluorescens FW300-N1B4)
MSDLSNRRILLIDDTPSIHEDFRKILTPTSALHVELDEMEAALFGSEVKSTNLLFELDSA
YGGQEGLGKLTQALQENRPYALAFVDMRMPEGWDGAQTIEHLWQEDPQLQVVVCTAYSDY
SWDELLERLHAHDRLLILKKPFDNIEVQQMANTLLTKWEMTERASIQMSHLEHLVDQRTA
QFKQASEALQREIDERKQLESQLVQSEKLASLGQLAAGVAHEINNPIGFISSNLGALDGY
FKQLQDMLDAYREAENAIGSSEVIEQLSQLRERVELDFLREDIPLLIKESKEGIGRVGQI
VKDLKDFSRVDSNQEWQWTNLHQGIESTLNIVANELKYKADVVKEFQQLPDIECLPSQIN
QVIMNLIVNASQAMGPERGTITLRTGLEGETVSIEVADTGIGIEPDNLQKIFDPFYTTKP
VGQGTGLGLSLSYGIVKKHQGDISVRSEVGVGSTFRVELPVRQSWPA