Protein Info for Pf1N1B4_788 in Pseudomonas fluorescens FW300-N1B4

Annotation: Response regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 452 PF00072: Response_reg" amino acids 16 to 124 (109 residues), 83.6 bits, see alignment E=1.2e-27 PF13487: HD_5" amino acids 194 to 360 (167 residues), 146.5 bits, see alignment E=7.1e-47

Best Hits

KEGG orthology group: None (inferred from 80% identity to pfo:Pfl01_4550)

Predicted SEED Role

"Response regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166MUD6 at UniProt or InterPro

Protein Sequence (452 amino acids)

>Pf1N1B4_788 Response regulator (Pseudomonas fluorescens FW300-N1B4)
MEEQLPTTETYKPKLLLVDDEESILNSLRRLLRGQPYEVLLATSGAQALEIMAQQPIDLV
MSDARMPNMDGATLLAHVHQRYPDTLRIMLTGYADPSVIIKAINGGQIHRYISKPWHDEE
MLLTLRQSLAYQHSERERLRLVQETWDQNEKLKLLNATLEKHVAARTSELQQTADMLDLA
YEELKRSYVTGTEVFSLLANLRLPPAKQTNRQIIELVRVYCKLHGLDEGSSRDLTMAAAL
YNIGKLSWTDSMMSTPSDLLHHNDRERYRGYPKQSESLLMTLDPMKDAARLILHHQERWD
GSGFPDRLKGEAIPFGSRLLKLAVDFIELQRGLILERQMNSDEALVYIRQYAGRLYDPEL
VEDFIQVCATYLSDVTLADPTVKVLTTRDLAAGMILARNLNADNGMLLLNAGKVLNGPLV
EKLIAFEAMEGARYSIFVKVPEEVEGALLETS