Protein Info for Pf1N1B4_725 in Pseudomonas fluorescens FW300-N1B4

Annotation: PAP2 superfamily protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 247 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 72 to 90 (19 residues), see Phobius details amino acids 102 to 121 (20 residues), see Phobius details amino acids 155 to 173 (19 residues), see Phobius details amino acids 184 to 201 (18 residues), see Phobius details amino acids 210 to 229 (20 residues), see Phobius details PF01569: PAP2" amino acids 101 to 230 (130 residues), 70.8 bits, see alignment E=4.9e-24

Best Hits

KEGG orthology group: None (inferred from 85% identity to pfo:Pfl01_4500)

Predicted SEED Role

"PAP2 superfamily protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166MT38 at UniProt or InterPro

Protein Sequence (247 amino acids)

>Pf1N1B4_725 PAP2 superfamily protein (Pseudomonas fluorescens FW300-N1B4)
MASTAARPASRPLNAWLCLGVPAIAAITLLLLELTSLDMDLAKLFYDPVAGAFIGRHSYF
LEDILHDRAKQVVIAFSVFAILGFIGAFFMDRLKPFKRELGCLVLSLALATSFVTPVKAV
TAVQCPWSLEQFGGHETYSELLSPRPHTDKPGRCWPGGHAATGFTLFALFFVLRDRRPRL
ARKAFVFAFALGSVFSISRMMQGAHFFSHNVWTAIFCWLICLGAYYYILYRPASKAELVT
KAQPVSA