Protein Info for Pf1N1B4_718 in Pseudomonas fluorescens FW300-N1B4
Updated annotation (from data): outer membrane component of uptake system, probably for ferrous iron
Rationale: PFam PF07433.7 (DUF1513). In a conserved cofit operon with two efeO-like genes (Pf1N1B4_715,Pf1N1B4_717) and an efeB-like gene (Pf1N1B4_716)
Original annotation: putative exported protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K09947, hypothetical protein (inferred from 93% identity to pba:PSEBR_a4366)Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A166MSX9 at UniProt or InterPro
Protein Sequence (366 amino acids)
>Pf1N1B4_718 outer membrane component of uptake system, probably for ferrous iron (Pseudomonas fluorescens FW300-N1B4) MLRRQALTLGSLLLGAVTLGGWTLFKQKDKSPLLLSARDDGDGKHYAVGYRLDGTRVFAT QVGQRCHDIINHPTLPIALFVARRPGTESYLIDLRDGTLLQTVVSQPNRHFYGHAVIHHS GDWLYATENDTSDPGRGLLGVYKFEDERLVHSGELSTHGVGPHQVSWMPDGETLIVANGG IRTEAESRVEMNLNAMEPSLVLMQRDGTLLSKETLAQQMNSVRHLGVASDGTIVAGQQFM GDAHESSELLAIKRPGQPFVAFPVPEHQLQAMGHYTASVAVHSELRLVALTAPRGNRFFI WDLDSGEVRLDAPLPDCAGVGAVADGFVVTSGQGRCRYYDCRQTTLVAKPLELPAGLWDN HLHLMA