Protein Info for Pf1N1B4_70 in Pseudomonas fluorescens FW300-N1B4

Annotation: Major facilitator family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 441 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 50 to 70 (21 residues), see Phobius details amino acids 85 to 104 (20 residues), see Phobius details amino acids 110 to 132 (23 residues), see Phobius details amino acids 144 to 167 (24 residues), see Phobius details amino acids 179 to 199 (21 residues), see Phobius details amino acids 247 to 269 (23 residues), see Phobius details amino acids 284 to 305 (22 residues), see Phobius details amino acids 313 to 329 (17 residues), see Phobius details amino acids 335 to 356 (22 residues), see Phobius details amino acids 367 to 390 (24 residues), see Phobius details amino acids 402 to 421 (20 residues), see Phobius details PF07690: MFS_1" amino acids 25 to 387 (363 residues), 167.9 bits, see alignment E=3.2e-53

Best Hits

KEGG orthology group: None (inferred from 92% identity to pfo:Pfl01_3720)

Predicted SEED Role

"Major facilitator family transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166MEM4 at UniProt or InterPro

Protein Sequence (441 amino acids)

>Pf1N1B4_70 Major facilitator family transporter (Pseudomonas fluorescens FW300-N1B4)
MTEGADSVLKSAISKVKRHVLPLFVIMFIVNYIDRVNIGFVRAHMEHDLGIGAAAYGFGA
GLFFIGYALFEVPSNILLQKVGARIWLTRIMLTWGLVAACMAFIQNETHFYILRFLLGVA
EAGFFPGVIYYFTRWLPGVERGKAIAIFLSGSAIASLISGPLSGLLLQISGLGMHGWQWM
YFIEGMFSVGLCVFVWFWLDSKPHDAKWLTLPEQDALVKAIDDEQLAREAATPIKPSLGT
LLKDRQIILFCVIYFFIQLTIYAATFWLPSIIKKMGDLSDIQVGLFNSIPWLLSIVGMYA
FATLSAKWKHQQAWVAAALLIAAAGMFMSTTGGPIFAFVAICFAALGFKSASSLFWPIPQ
AYLDARIAAGVIALINSVGNLGGFVAPTTFGLLEQHTGSIQGGLYGLAATSIIAAIIVFA
ARNKPKPAPVVALGKPAPNHA