Protein Info for Pf1N1B4_681 in Pseudomonas fluorescens FW300-N1B4

Annotation: FOG: GGDEF domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 368 transmembrane" amino acids 14 to 35 (22 residues), see Phobius details amino acids 41 to 62 (22 residues), see Phobius details amino acids 74 to 92 (19 residues), see Phobius details amino acids 98 to 116 (19 residues), see Phobius details amino acids 122 to 142 (21 residues), see Phobius details amino acids 150 to 172 (23 residues), see Phobius details TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 201 to 360 (160 residues), 133.5 bits, see alignment E=2.9e-43 PF00990: GGDEF" amino acids 205 to 358 (154 residues), 138.8 bits, see alignment E=7.2e-45

Best Hits

KEGG orthology group: None (inferred from 86% identity to pfo:Pfl01_4451)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161ZED6 at UniProt or InterPro

Protein Sequence (368 amino acids)

>Pf1N1B4_681 FOG: GGDEF domain (Pseudomonas fluorescens FW300-N1B4)
LTHNAIQRLLLKRFALAAGTYALALLLLWLAFFTGHYDESIAGMAIGSALVVLSQAVLFA
VFSSGRNLRFSDPSLTEVQILLGLGWQTWLIAHLDEARGAFLVFYPLILLFGLFHLSRMA
FARCAFLVFFSFSAITLWEGYHFQLPDPTLALLQVCVLFVVLGWLVLYARYVQMSRQRMR
QRRFALQAHQDTLRGMMRQLEGLVATDELTGLFNRRHFLRLASRELNAMETDVVHGLALI
DLDHFKRINDVHGHAAGDQVLQAFAGVATACLRDGDVLARYGGEEFVVLLPDCDAERLTA
CCERLRIAFMDVELVGLDVRNLSLSVGMTLLALDDDLDDALHRADQALYRAKRDGRNRCA
AAWENVDA