Protein Info for Pf1N1B4_668 in Pseudomonas fluorescens FW300-N1B4

Annotation: Exodeoxyribonuclease I (EC 3.1.11.1)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 476 PF00929: RNase_T" amino acids 6 to 186 (181 residues), 84.8 bits, see alignment E=1.1e-27 PF08411: Exonuc_X-T_C" amino acids 205 to 468 (264 residues), 325 bits, see alignment E=3.3e-101

Best Hits

KEGG orthology group: K01141, exodeoxyribonuclease I [EC: 3.1.11.1] (inferred from 89% identity to pfo:Pfl01_4438)

Predicted SEED Role

"Exodeoxyribonuclease I (EC 3.1.11.1)" in subsystem DNA Repair Base Excision (EC 3.1.11.1)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.1.11.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166MRZ6 at UniProt or InterPro

Protein Sequence (476 amino acids)

>Pf1N1B4_668 Exodeoxyribonuclease I (EC 3.1.11.1) (Pseudomonas fluorescens FW300-N1B4)
VTSIFWYDYETTGINPRCDRPLQVAGIRTDFDLNEIDEPVNLYCQPSDDILPHPAACAIT
GITPARLAEQGLSEADFMTRVHTQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYARE
WQGGNSRWDLIDVVRAAYALRPDGLVWPRDEEGRVTLKLERLTAANGIDHGHAHEALSDV
RATIALARLIREKQPKLYDWLFQLRSKQKVMDQIRLLQPMVHISGRFSAARNYVGVVLPL
AWHPRNRNALIVCDLHLDPQGLLDLDAEALRQRLYTRRDDLAEGELPVPLKLIHINKCPV
VAPLSVLRPVDQQRLGLDMALYQERALRLSDAQHVWRDKVAGIYASDDFSPSQDPEQQLY
DGFIGDRDRRLCEQVRAADPAQLAQEQWPFDDERLPELLFRYRARNFPDTLSLEEQERWR
IFCQKRLCAPEWGAPNTLNSFLEAAAQLTTSATSFQREVLDQWQNHVQSLRKRLSL