Protein Info for Pf1N1B4_659 in Pseudomonas fluorescens FW300-N1B4

Annotation: ATPase component BioM of energizing module of biotin ECF transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 499 PF05872: HerA_C" amino acids 13 to 498 (486 residues), 700.5 bits, see alignment E=1.3e-214 PF01935: DUF87" amino acids 27 to 248 (222 residues), 26 bits, see alignment E=9.3e-10

Best Hits

Swiss-Prot: 52% identical to YJGR_ECOLI: Uncharacterized protein YjgR (yjgR) from Escherichia coli (strain K12)

KEGG orthology group: K06915, (no description) (inferred from 93% identity to pfo:Pfl01_4430)

Predicted SEED Role

"ATPase component BioM of energizing module of biotin ECF transporter" in subsystem Biotin biosynthesis or ECF class transporters

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166QH86 at UniProt or InterPro

Protein Sequence (499 amino acids)

>Pf1N1B4_659 ATPase component BioM of energizing module of biotin ECF transporter (Pseudomonas fluorescens FW300-N1B4)
MGDKMPDSSQLVIGADLAGQSIAQAMRLANRHGLIAGATGTGKTVTLQRLAEAFSDAGVA
VFAADIKGDLCGLGAAGNPQGKVAERIAGMPWLNHKPQAYPVTLWDINGQSGHPLRTTLS
EMGPLLLGSLLELTDSQQSALYAAFKVADREGLLLLDLKDLKALLNHLRDNPELLGDDAA
LMTTGSSQALLRRLATLEQQGAEALFGEPALQLEDMLQPAVDGRGRIHLLDASRLVHEAP
KVYATFLLWLLAELFEQLPERGDAEKPLLALFFDEAHLLFAGTPKALQERLEQVVRLIRS
KGVGVYFVTQSPGDLPDDVLAQLGLRIQHGLRAFTAKEQKSLRAVADGFRPNPAFEALSV
LTELGIGEALVGTLQDKGTPGMVQRVLVAPPQSRIGPLTETERTVLIAGSPFKGRYDKPV
DRESAYEVLMGRKGLAPDPEAVPGKPAPEEPSFTEQAGEFLGTAAGQALKSAMRQAANQL
GRQLVRGLMGSLLGGSKRR