Protein Info for Pf1N1B4_658 in Pseudomonas fluorescens FW300-N1B4

Annotation: Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 151 PF05258: DciA" amino acids 20 to 97 (78 residues), 44.9 bits, see alignment E=5.7e-16

Best Hits

KEGG orthology group: None (inferred from 90% identity to pba:PSEBR_a4460)

Predicted SEED Role

"Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161Z4F2 at UniProt or InterPro

Protein Sequence (151 amino acids)

>Pf1N1B4_658 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives (Pseudomonas fluorescens FW300-N1B4)
MAFRPLTARAPAVLLREAKPLKAIFGHAQRLGHLQRLVESQLQPAAREHCHVASWREGSL
LLIVTDGHWATRLRYQQKRLQRQLQLFDEFASLTRILFKVQPPTVQQGAAGHTINLSTDA
AATIQATADGISDPNLRAALERLAAHAKPKT