Protein Info for Pf1N1B4_644 in Pseudomonas fluorescens FW300-N1B4

Annotation: Cold shock protein CspC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 36 to 55 (20 residues), see Phobius details amino acids 66 to 88 (23 residues), see Phobius details amino acids 94 to 115 (22 residues), see Phobius details PF00313: CSD" amino acids 133 to 194 (62 residues), 88.8 bits, see alignment E=8.4e-30

Best Hits

KEGG orthology group: K03704, cold shock protein (beta-ribbon, CspA family) (inferred from 94% identity to pfo:Pfl01_4415)

Predicted SEED Role

"Cold shock protein CspC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166MRN3 at UniProt or InterPro

Protein Sequence (200 amino acids)

>Pf1N1B4_644 Cold shock protein CspC (Pseudomonas fluorescens FW300-N1B4)
MLKIVHLLMGAAALLLSFIPSLRSEALPYLQQPDALYLAFFGLLNLTLAPVIPYWNKGPR
HQLQNLVSALLVLAVVLQTLTLFAPMPVIAGQPAVLFSLVVALIAILLHLAVSFYKSSPA
AASPSYDMSNRDTGTVKWFNTSKGFGFISRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFS
VMNRDKGLQAEDVIAALPRR