Protein Info for Pf1N1B4_5955 in Pseudomonas fluorescens FW300-N1B4

Annotation: Permease of the major facilitator superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 409 transmembrane" amino acids 21 to 41 (21 residues), see Phobius details amino acids 48 to 72 (25 residues), see Phobius details amino acids 83 to 106 (24 residues), see Phobius details amino acids 163 to 193 (31 residues), see Phobius details amino acids 215 to 239 (25 residues), see Phobius details amino acids 250 to 267 (18 residues), see Phobius details amino acids 288 to 308 (21 residues), see Phobius details amino acids 315 to 339 (25 residues), see Phobius details amino acids 351 to 371 (21 residues), see Phobius details amino acids 376 to 399 (24 residues), see Phobius details PF07690: MFS_1" amino acids 23 to 343 (321 residues), 68.5 bits, see alignment E=2.5e-23

Best Hits

KEGG orthology group: None (inferred from 92% identity to pba:PSEBR_a3679)

MetaCyc: 86% identical to 1-arseno-3-phosphoglycerate exporter (Pseudomonas aeruginosa)
TRANS-RXN1YI0-17

Predicted SEED Role

"Permease of the major facilitator superfamily"

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166R286 at UniProt or InterPro

Protein Sequence (409 amino acids)

>Pf1N1B4_5955 Permease of the major facilitator superfamily (Pseudomonas fluorescens FW300-N1B4)
MKALSALTPQVRQYLLVTGNYWAFTLTDGALRMLVVLHFHALGYSPLQIAALFLFYELFG
VITNLLGGYLGARLGLNRTMNIGLGMQVVALLMLTVPVAWLTIPWVMGAQALSGVAKDLN
KMSAKSSVKLLVPEGQQGTLYQWIAILTGSKNALKGVGFFLGGALLALIGFKGALLAMAG
VLALIWVSSLILLKKDLGKAKAKPRFRDILSKSRAINILSAARMFLFGARDVWFVVALPV
YLSSVFGWDFWKVGGFLAAWVIGYGIVQSFAPRITGKKRGHVPDGRAAFLWAFALAGLPA
AIALGLNTGLSQQAVLLGGLMVFGALFAVNSSLHSYLIVSYAKEDGVSLDVGFYYMSNAM
GRLIGTVLSGWVYQAFGLGACLWISSAFVIFAALISVALPRHAKAIQLP