Protein Info for Pf1N1B4_5943 in Pseudomonas fluorescens FW300-N1B4

Annotation: hypothetical protein, INTERPRO prediction: regulator of chromosome condensation

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 396 transmembrane" amino acids 312 to 332 (21 residues), see Phobius details PF04230: PS_pyruv_trans" amino acids 14 to 333 (320 residues), 74.5 bits, see alignment E=6.9e-25

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166R1W7 at UniProt or InterPro

Protein Sequence (396 amino acids)

>Pf1N1B4_5943 hypothetical protein, INTERPRO prediction: regulator of chromosome condensation (Pseudomonas fluorescens FW300-N1B4)
MKQYQIVGPFDRYNYGDLLFPLILEKALQSESGTIVNYYGLIDSDLSQYSGKPTRSIKDF
YQQTKSGDHVIIAGGESLCTSWADLYSYLSPTFNKVYKYKLVRAVDRRTMLVSKIAKHLC
GGATDLPFSFSSSELNMDIDISLNCVGGAAIASWTDTKRRLLKKKIRSHKAIGVRDRKTF
SILSEKGDLPSLKLVPDSAILMERLLSEEMEQRKHSFSHYKSIQNDYIFFQVGCEKTDDL
SEVISNLDSVLSKSSFDLVLCPIGHALGHEDLLPLKTIRNALIGKHKARVVLIEPVIDVY
EIMMLISKSSMYIGTSLHGTITSLSFGVPYITFNKQIKKLEEYIKTWGAPGLTTQYHAKD
ISVAFDKVSGITKQSILEHTRPQKDLVTEFISELTS