Protein Info for Pf1N1B4_5932 in Pseudomonas fluorescens FW300-N1B4

Annotation: YjbH outer membrane lipoprotein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF06082: YjbH" amino acids 27 to 684 (658 residues), 813.3 bits, see alignment E=1.2e-248

Best Hits

KEGG orthology group: None (inferred from 74% identity to pfo:Pfl01_3830)

Predicted SEED Role

"YjbH outer membrane lipoprotein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161ZGW8 at UniProt or InterPro

Protein Sequence (700 amino acids)

>Pf1N1B4_5932 YjbH outer membrane lipoprotein (Pseudomonas fluorescens FW300-N1B4)
LKCPFKLRFAAVLLLPCGFAHGEPRYTQSDFGGVGLLQTPTARMAPAGELSATASRTDPY
SRYSFSLQPLDWLEGSFRYTAITNRNYGPEDFSGDQSFKDKAIDIKARLWEETRWAPQVA
VGARDIGGTGLFSSEYFVANKRYGDLDFSLGIAWGYLGNRGDFSNPLAVFGSKFNDRPES
SAAVARAGDVNTNAYFRGHPSLFGGIAYQTPWAPLSLKLEYEGNDYKNEPLDNSIKQDLP
INIGVVYKLADSVDLSAGWERGNTAMFGITLHTNFVSRKAPVKTYDPPAEPLPVQAPSTP
ADQVNWADVSDRLQQNAGYKVKRITQRGSELMVYGEQSRYFYPSKAVGRASRILDNSVNQ
DIDWFTLVNQRYDMSIEETSVPRETFRAVVNNDQPLKDLHRTTEVNPAMAHRETTLYTQA
LEPFTYGLGLGYKQNIGGPDGLLYQFTADADAEYRFTRNTWWSGLLSVNLLNNYDKFTYD
APSGLPRVRTDLRQYMTTSDVMMPTFQFNHAKQLDQDLYGMVYGGYLESMYAGVGSEVLY
RPAGKRWSVGADLNFVRQRDYDQGFGLRGYNTVTGHVTSYTELPNDMLAAVSVGRYLARD
WGTTVDLSRVFKNGVKFGAWVTLTSASKEEYGEGSFDKGIYVSIPFDELMSTSTMRRANI
VWAPLTRDGGARLNRAYSLQTMTDGRDSDLFYNNFEKITE