Protein Info for Pf1N1B4_5894 in Pseudomonas fluorescens FW300-N1B4

Annotation: Glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 378 transmembrane" amino acids 6 to 31 (26 residues), see Phobius details amino acids 288 to 307 (20 residues), see Phobius details amino acids 313 to 333 (21 residues), see Phobius details amino acids 345 to 364 (20 residues), see Phobius details PF13641: Glyco_tranf_2_3" amino acids 41 to 257 (217 residues), 62.5 bits, see alignment E=1.1e-20 PF10111: Glyco_tranf_2_2" amino acids 45 to 143 (99 residues), 35.8 bits, see alignment E=1.3e-12 PF00535: Glycos_transf_2" amino acids 45 to 170 (126 residues), 84.7 bits, see alignment E=1.4e-27 PF13632: Glyco_trans_2_3" amino acids 125 to 313 (189 residues), 44.9 bits, see alignment E=2.5e-15

Best Hits

KEGG orthology group: None (inferred from 84% identity to pfo:Pfl01_2016)

Predicted SEED Role

"Glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166R0Y1 at UniProt or InterPro

Protein Sequence (378 amino acids)

>Pf1N1B4_5894 Glycosyltransferase (Pseudomonas fluorescens FW300-N1B4)
VAEFIFWLCLLLPVYAWLGYPLMLTLIAPLFRARRHAPAPPMNVSIIIAAHNEARHIEEK
LRILLAQDYQARSLHIILASDGSTDDTVACAHKVIDPRISVLDLPRQGKAATLNAGVALS
TGEILVFTDADNQWSTDTLGQLLAPLADPQVGACAGHMLIPVPGKGLSLGDSLYRHYEGW
LRKVENRTGCMVSADGALLALRRELFQYVPAEVNDDFFISTCAPVAFKRIVYVPQAQVSD
QGVDEIAKQWRRRQRVTVGGLQSLAQRRELLNPWRYGLYAIALISHKLIRRLAPILLVPL
LLSNVWLWNVHGFYRLSLIAQLLGYAMAIVGLLDVQHHLPKPFRLAAFVLVTLAGMSIGL
WQFLRGQRYAQWNPEQNR