Protein Info for Pf1N1B4_5872 in Pseudomonas fluorescens FW300-N1B4

Annotation: Rhs family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1591 transmembrane" amino acids 265 to 281 (17 residues), see Phobius details amino acids 297 to 317 (21 residues), see Phobius details PF20148: DUF6531" amino acids 451 to 523 (73 residues), 76.4 bits, see alignment 2.7e-25 TIGR01643: YD repeat (two copies)" amino acids 644 to 679 (36 residues), 23 bits, see alignment (E = 8.4e-09) amino acids 752 to 782 (31 residues), 24.7 bits, see alignment (E = 2.5e-09) amino acids 814 to 851 (38 residues), 29.3 bits, see alignment (E = 8.8e-11) amino acids 855 to 895 (41 residues), 25.1 bits, see alignment (E = 1.8e-09) amino acids 897 to 938 (42 residues), 35.6 bits, see alignment (E = 8.6e-13) amino acids 1030 to 1060 (31 residues), 20.9 bits, see alignment (E = 3.9e-08) amino acids 1050 to 1080 (31 residues), 20.4 bits, see alignment (E = 5.4e-08) amino acids 1070 to 1106 (37 residues), 18.8 bits, see alignment (E = 1.8e-07) amino acids 1274 to 1306 (33 residues), 27.3 bits, see alignment (E = 3.8e-10) PF05593: RHS_repeat" amino acids 736 to 764 (29 residues), 23.1 bits, see alignment (E = 1.2e-08) amino acids 752 to 783 (32 residues), 32 bits, see alignment (E = 1.9e-11) amino acids 814 to 849 (36 residues), 34.7 bits, see alignment (E = 2.7e-12) amino acids 855 to 891 (37 residues), 27.4 bits, see alignment (E = 5.2e-10) amino acids 882 to 913 (32 residues), 23.2 bits, see alignment (E = 1.1e-08) amino acids 918 to 955 (38 residues), 28.9 bits, see alignment (E = 1.8e-10) amino acids 1030 to 1062 (33 residues), 31 bits, see alignment (E = 4e-11) amino acids 1274 to 1308 (35 residues), 24.2 bits, see alignment (E = 5.2e-09) PF03527: RHS" amino acids 1356 to 1389 (34 residues), 59 bits, see alignment (E = 4.9e-20) TIGR03696: RHS repeat-associated core domain" amino acids 1382 to 1458 (77 residues), 97.3 bits, see alignment 5.9e-32

Best Hits

KEGG orthology group: None (inferred from 88% identity to pfo:Pfl01_2042)

Predicted SEED Role

"Rhs family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1591 amino acids)

>Pf1N1B4_5872 Rhs family protein (Pseudomonas fluorescens FW300-N1B4)
MSILMGEIVGNLTAKQPDAQAIISDFKKCLKDYREHAEAWYGGVLDAEQQFKVGDEVHTQ
DKDSKKENTLYANCPANGKLTLVHSFESARFVPIGNTPVRLVPVVDGRFIGKNEAGPEIN
KTIDSTGILEVTGLTPNQQYKITFFPNPTRAQIDSLFNSYQGVIGDLGGWLQTEWSTRFL
PLWQAHTDASMGGRALQELEAAWEGFLKAIMGLWGDIKSLYNLVAHPRENYEKLKNFFTE
EQIKKIYDASAEAIHTALLIASDEPLMWIYVAAIMAWVKMLPPQTCTEVLAQLTTEFLLN
ILVGVVLTGGLGLAVRIGTKVVKATQNSGKVVKLIEDFTGMLMKVSKTSATPHTEAARPL
LLNGNSAFNPARKANVEIAPPKPAETATAPKKKPPVAGGKVETDAQIQARGKTESATRVE
QKEAVDNAPNQSKNPADQPTECANKTCLKDDPISMVTGEELLTLSDGELGGLLPLEWTRL
YRSSAVEIDSRLGHGWSHSLSHRLQLDDEGVLWTDNENRQIRFPMPTEQRPAITNSLSQA
AIYLGDAPGELILTQAGPKARFYHFRAGRLITISDAYDNQVHISYDFVDRIQRIDNGAGR
ALLLRYDDRHIAAVDHQQQRSEYNDRGERQDPWLTIQTLVSYRYNTRNQLVSSTNAAGET
EHYRYNDQHVILERQLAGGASFFWEWEREGKLSRCVRHWANYSQLEARYEWDDKGSVTAY
NSDGSEHVYVHDKNARLISETAPDGGETQKAYDDQGRLVAVKDPMGAITEYQYSDAGRLM
AVIPPEDEPTRYNYFNGQLIDVQRGKARWKYERNRQGDITQQTDPHGAETHYNYDRQGRL
LEIRHPDGSRHQLGWNNLGQLLEERLPDGSQRKYRYDALGRQITRQDETGAITHYQWDAV
DRLTQITLPGGATRAFTYNPYGRVTAERDELGRITRYEYADNLHLVSRRINPDGSQLRYR
YDNSRLLLTEIENERGEHYHLDYYPNGLIQQETGFDGRRTAYEYDLNGQLLKKTEFGDDG
SELTTEYQRDAAGRLLVKTLADGEEIHYSYDALGRLVNVDDGNWPLAYEYDLQDRLITEH
QGWGTLRYEYDSVGQLKHCRLPDGSKLDYRHQPGGQLSSIDLNGSRLTSHQFSAGREQQR
QQGLLLSQYQYDEQGRLQAHSVSQREKNLFQRRYTYDANGNLAGIDDSRKGHRSYHYDPL
DRLINVRGTTPESFAHDPAGNLLGQNNEPTANLANVKGNRLLMQGDRHYDYDAYGNLIRE
RRGAGQKLVTEYRYDCQHRLIGVSLPGGSVASYKYDAFGRRIEKTVDGHTTEFLWQGERL
IAESGDNRYRSYIYEPGSFRPLAMLDGEGPLKAAPFYYQLDHLGTPQELTDYSGEIMWSA
KYRAYGNLAALDVAEIDNPLRFQGQYFDAETGLHYNRHRYYNPGTGRFLTPDPIKLAGGL
NNYQYVPNPTGWVDPMGLTSCPGAGGSKPEIRLEDPPVKATINEGSPPPPAPPKPDKWSR
EPKSIQDQMTLQAAKEGRGVAIIENLNDPAFKGMDKIELKIKSKNGNDSVVHYVRNPQTG
ELMDFKFKKHSTDDIKPWGNDPSVPPGVIDK