Protein Info for Pf1N1B4_5828 in Pseudomonas fluorescens FW300-N1B4

Annotation: Mobile element protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 433 transmembrane" amino acids 389 to 405 (17 residues), see Phobius details PF01609: DDE_Tnp_1" amino acids 168 to 351 (184 residues), 25 bits, see alignment E=7.5e-10

Best Hits

KEGG orthology group: None (inferred from 53% identity to prw:PsycPRwf_1615)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (433 amino acids)

>Pf1N1B4_5828 Mobile element protein (Pseudomonas fluorescens FW300-N1B4)
MTGLDARLTKRYDELVMGHSNGLPALAAGMKALPRSDKAFAQTQALWRFLSNDRVRPVDL
VKPLLALAHEGCRDDCDDYALVMHDWSRLNYMHHHSKADRLQMSHRGDIGYELQSSLLVT
DRDGAPICTPTQNLATRDGVLSTRAEEVLAPEKHLNELTQRITWLEQQSFAKPLVHVVDR
EADSVAHLRQWQAEGRQWLVRVKAGSTASHEGQSRPLSQIASQMSYSETRKVDYKGKSAI
QWVGETAVVLTRQAQPFTKDRADRKTLRKSGEPLPARLVVSRIIGDNGHLLAEWYLLSNL
GPEVAAERLALWYYWRWRIESYFKLLKGGGHQLENWQQESGEAVFKRLLIASQACAVSWR
LMRAEGEFAEQTREFLVRLSGRQMKRSQPVTASAVLAGLYMLLAMCETLEQYTPQELAGF
AKEAIGWVASRRL