Protein Info for Pf1N1B4_5821 in Pseudomonas fluorescens FW300-N1B4

Annotation: Permease of the drug/metabolite transporter (DMT) superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 342 transmembrane" amino acids 51 to 71 (21 residues), see Phobius details amino acids 77 to 96 (20 residues), see Phobius details amino acids 106 to 124 (19 residues), see Phobius details amino acids 136 to 155 (20 residues), see Phobius details amino acids 165 to 185 (21 residues), see Phobius details amino acids 192 to 213 (22 residues), see Phobius details amino acids 220 to 239 (20 residues), see Phobius details amino acids 245 to 268 (24 residues), see Phobius details amino acids 281 to 298 (18 residues), see Phobius details amino acids 304 to 322 (19 residues), see Phobius details PF00892: EamA" amino acids 49 to 178 (130 residues), 63.3 bits, see alignment E=1.4e-21 amino acids 189 to 319 (131 residues), 41.9 bits, see alignment E=5.4e-15

Best Hits

KEGG orthology group: None (inferred from 89% identity to pba:PSEBR_a3332)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161ZGP5 at UniProt or InterPro

Protein Sequence (342 amino acids)

>Pf1N1B4_5821 Permease of the drug/metabolite transporter (DMT) superfamily (Pseudomonas fluorescens FW300-N1B4)
VHYIAHLMVLRSILPNFRRIVRLPQVARKVMTSVNSSPASSRFSRFSKAECVLVLITMVW
GGTFLLVQHAMTVSGPMFFVGLRFAAAAIIVALFSWRHLRELTLFELKAGAFIGVAIMLG
YGLQTVGLQSIPSSQSAFITALYVPFVPLLQWLVLGRRPGLMPSIGIMLAFTGLMLLSGP
AGASFNFSPGEIATLISAVAIAAEIILISTYAGQVDVRRVTVVQLAVTSVLAFLMVVPTQ
EVIPGFSWLLLCSALGLGAASAAIQVAMNWAQKSVSPTRATLIYAGEPVWAGIVGRIAGE
RLPAIALVGAGLIVAAVIVSELKTKGKAVLEVEDDLDREAEH