Protein Info for Pf1N1B4_5762 in Pseudomonas fluorescens FW300-N1B4

Annotation: Nitric oxide reductase activation protein NorE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 175 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 40 to 59 (20 residues), see Phobius details amino acids 71 to 90 (20 residues), see Phobius details amino acids 110 to 133 (24 residues), see Phobius details amino acids 154 to 174 (21 residues), see Phobius details PF00510: COX3" amino acids 4 to 173 (170 residues), 50.3 bits, see alignment E=1.6e-17

Best Hits

KEGG orthology group: K02164, nitric oxide reductase NorE protein (inferred from 75% identity to pba:PSEBR_a3170)

Predicted SEED Role

"Nitric oxide reductase activation protein NorE" in subsystem Denitrification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166QXW2 at UniProt or InterPro

Protein Sequence (175 amino acids)

>Pf1N1B4_5762 Nitric oxide reductase activation protein NorE (Pseudomonas fluorescens FW300-N1B4)
MWFFILAELSVFAILILAFAVTQALKPQLFGESRLLLNTSTGLAMTLSLLTAGLFAALAQ
EQVKRSRSRYGAVYLLAALLAASVYVVLKITEYRHLLASGLGMEHNTFFTLYWILTGFHF
LHVLLGMVILGWLAERCRRGRYNAANRSGLESGVLYWHMVDLIWVVLFPLVYVLN