Protein Info for Pf1N1B4_5716 in Pseudomonas fluorescens FW300-N1B4

Annotation: Acriflavin resistance protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1031 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details amino acids 32 to 32 (1 residues), see Phobius details transmembrane" amino acids 31 to 31 (1 residues), see Phobius details amino acids 337 to 356 (20 residues), see Phobius details amino acids 362 to 384 (23 residues), see Phobius details amino acids 390 to 413 (24 residues), see Phobius details amino acids 434 to 453 (20 residues), see Phobius details amino acids 465 to 489 (25 residues), see Phobius details amino acids 525 to 545 (21 residues), see Phobius details amino acids 857 to 876 (20 residues), see Phobius details amino acids 884 to 903 (20 residues), see Phobius details amino acids 909 to 928 (20 residues), see Phobius details amino acids 959 to 978 (20 residues), see Phobius details amino acids 984 to 1007 (24 residues), see Phobius details PF00873: ACR_tran" amino acids 8 to 1006 (999 residues), 547.9 bits, see alignment E=2.1e-168

Best Hits

KEGG orthology group: None (inferred from 78% identity to app:CAP2UW1_0138)

Predicted SEED Role

"Acriflavin resistance protein" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161ZGH7 at UniProt or InterPro

Protein Sequence (1031 amino acids)

>Pf1N1B4_5716 Acriflavin resistance protein (Pseudomonas fluorescens FW300-N1B4)
MNNLNLTDWALRHRAIVLFMLLIVAMAGAFSFTRLGQLEDPNFSVPSMTAMVIWPGATAQ
QMQDQVLNRMEKKFEQIDNFEKVVTYARQGYAGMTLTVRGGTSKADQREAWYQARKKLND
LSRELPDGVIGPIVNDEYGDVYGLMYAVKGDGIGHADLSDAAEDIKRQMLKVPMVKKIDV
IGKQAKRVYVEFSHERLAALGITPLAIAESLKSQNAMLPAGQIDTRGDRVMVRVSGQFAS
EEAIRNVPISAGGRLIKLGDIATVTRGFEDPPTYTVRHNGQPVLMLGITMTSDGNIVDLG
KAMDTAVAKIQSELPHGVELELVADQPTTVKDAIHDFAHALAEALIIVIAVSLASLGWRA
GLVVATTVPLVLGGVALVMLAMGWNLERISLGSLIIALGLLVDDAIIAIEMMVAKMETGM
DRVKAAAFSYQSTAMPRLTGALITVVGFLPIGLSKSTTGEYAGGIFWIVGAAVLFSWICS
GIFTPYLAVKMLPNDLGKHQHGDMYDTKFYRTLRRLIDTAIERRWVVIGATFGALVLALA
CIKLVPQQFFPNSSRPELVIDLRVKEGASFAATTEQVKHMEEILAKDEDVRFYTAYTGAG
APRFYLSLNPELPNPGFAQFVVMTKDLDARERVRERLVTSADQQFPQAWVRVTRLELGPP
VGYPVQFRVVGPDTQVVRRIAREVENVVASNPKVRDLQLDWNDPVRTLKVELDQDKASAL
GLTPADVSLATQTVMNGATLSQLREHEDLIDIVARAVPEERLSLDTLKDINLYTRQGTVV
PLSQVAQVRSELEEPVLWRRNRDMAITVRADVKDGEQGVSVTQEIQPLLKDIEAKLPSGY
RIDVGGAVEESDKANKALLAVAPLMLISILLLLMLQLQSFSRMWMVVLTAPLGLIGVVPA
LLVFQSPLGFVAILGIIALGGMIMRNSVILIDQVQTEIAEGRDPWNAVLDAAIHRARPVM
LTALATVLAMIPLTRSVFWGPMAIAIMGGLTVATLLTIFFVPALYAAWFKVGRQPAADSQ
QVRGDAALASE