Protein Info for Pf1N1B4_5684 in Pseudomonas fluorescens FW300-N1B4

Annotation: Glyceraldehyde-3-phosphate dehydrogenase, putative

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 541 PF00171: Aldedh" amino acids 64 to 505 (442 residues), 310.2 bits, see alignment E=1.1e-96

Best Hits

KEGG orthology group: K00131, glyceraldehyde-3-phosphate dehydrogenase (NADP) [EC: 1.2.1.9] (inferred from 92% identity to pfo:Pfl01_2492)

Predicted SEED Role

"Glyceraldehyde-3-phosphate dehydrogenase, putative"

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.2.1.9

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166QWI2 at UniProt or InterPro

Protein Sequence (541 amino acids)

>Pf1N1B4_5684 Glyceraldehyde-3-phosphate dehydrogenase, putative (Pseudomonas fluorescens FW300-N1B4)
MTTAQILGNLFPTADNVPEKYRLNGPTEQREYLVDGELKTWSGPLAQVRSPVYLSGANGD
EQVILGSTPLLDADTALTALDAAVRAYDRGQGLWPTMRVAERIQHVETFLARMREQREAV
VKLLMWEIGKNLKDSEKEFDRTCDYIVDTVNALKELDRRSSRFELEQDTLGQIRRVPLGV
ALCMGPYNYPLNETFTTLIPALIMGNTVVFKPAKLGVLLIRPLLEAFRDSFPAGVINVIY
GSGRETVSALMASGKIDIFAFIGTNKAASDLKKLHPRPHRLRAALGLDAKNPGIVLPEVD
LDNAVSEAVTGSLSFNGQRCTALKILFVHEDVVEAFIEKFNAKLADLKPGMPWDSGVALT
PLPESGKVDYLHTLVADAVSKGAAVVNPNGGEARASFFYPAVLYPVTPQMRVYQEEQFGP
VVPIVPYRHLDTVIDYVLESDFGQQLSIFGTNPVAVGRLVDTFANQVGRINLNAQCQRGP
DTYPFNGRKNSAEGTLSVHDALRVFSIRTLVATKFQESSKELLSEIISGRNSSFLTTDYI
F