Protein Info for Pf1N1B4_5683 in Pseudomonas fluorescens FW300-N1B4

Annotation: Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 295 TIGR01413: Dyp-type peroxidase family" amino acids 5 to 283 (279 residues), 191.6 bits, see alignment E=1.1e-60 PF20628: Dyp_perox_C" amino acids 127 to 282 (156 residues), 109.2 bits, see alignment E=9.4e-36

Best Hits

KEGG orthology group: K07223, putative iron-dependent peroxidase (inferred from 88% identity to pfo:Pfl01_3166)

Predicted SEED Role

"Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166QWH3 at UniProt or InterPro

Protein Sequence (295 amino acids)

>Pf1N1B4_5683 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup (Pseudomonas fluorescens FW300-N1B4)
MSYYQPGILATPVPPQARHMFFALESAEALPAALDNLMRLVDGKSAVVGFGESLVKALHA
QIDGLRAFPALVGVGVDNPSTQHALWCWLHGVDRGELLNRSNAIEAALAPALRLVQMNET
FRHMTGHDLTGYEDGTENPHDEAAVAAALLSDGADGLVGGSFAAIQQWQHDLKGFHALPP
HEKDNIMGRRLSDNEELDDAPISAHVKRTAQESFTPEAFVVRRSMPWIEGDRAGLMFLAF
GFSLDAFESQLRRMSGLEDGITDGLYRISRPITGGYYWCPPLKDGRLDLRALRVG