Protein Info for Pf1N1B4_5677 in Pseudomonas fluorescens FW300-N1B4

Annotation: putative exported protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 173 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF13628: DUF4142" amino acids 27 to 166 (140 residues), 132.6 bits, see alignment E=6.1e-43

Best Hits

KEGG orthology group: K08995, putative membrane protein (inferred from 80% identity to pfo:Pfl01_3132)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161XGI0 at UniProt or InterPro

Protein Sequence (173 amino acids)

>Pf1N1B4_5677 putative exported protein (Pseudomonas fluorescens FW300-N1B4)
MDGFNLRHLALAVALSTSMGTAFAADSNDFVDDAVAGGIAEVETSKLALEKSSSADVKAF
ANMMVTDHSKANEELAALAKKHDIEVPDTTTMVKQAKEKILDLRDESFDTAYANNQVKAH
EEAIERFKKEANTVTDDKTKGATDLKAFAQKMLPALEKHLDMAKKLQAAHPDK