Protein Info for Pf1N1B4_5667 in Pseudomonas fluorescens FW300-N1B4

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1311 PF20178: DUF6543" amino acids 33 to 321 (289 residues), 141.1 bits, see alignment E=7.8e-45 PF14496: NEL" amino acids 1197 to 1272 (76 residues), 33.1 bits, see alignment 6.2e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161XN97 at UniProt or InterPro

Protein Sequence (1311 amino acids)

>Pf1N1B4_5667 hypothetical protein (Pseudomonas fluorescens FW300-N1B4)
MNDHAHGDTPTRNVLMRNELKAAVETALAQTPAQFGERLIKDKWGADIDPQTALLVTLDY
NYHGHPPENGVHQGRVGSSRTLIQALLGNYQTVGDGRFGETAFGLYTPPDIGPSVRIVEK
VDEFAYVGNGNHDTYEGIYRATVPQSYGPHTQINLRPADFKQWVWGLFLSRRYQTYLDQA
WPSDAVIAAPGPYALRTSVKAAFVMAARLQYQERCLSREGLELAMQAAGLPAAQSWETLT
IEQLQAPTRMPSSVEASRLKLYRYTATDIWCFRARSGARVLLYIPGNSSPLHEFNDSRQL
RQWIVAQGREADTKQALAAHFCEEDREDGTFHAGVLTALEGMAVYPGMHRLTKNAGFFND
DGHWDPDDYINFDRSPSASDPFAQLVSSMKQAAQDSVKTIRDDAQVNRDNLSAFVEPIVQ
WVNRFGPLALFVPGGEGLLVLAGLIDAGYGLDEAIEGKTASERSEGVTRTVFGLLNALPL
AGAAASLKGEGAEATALARAEHGAEEPAVRLDGMPVDAPPVHVAPLESAAQMPTRLSLLR
GIGAPVDAFSDEVLVQIGKVSAVDDDLLRMMQAGRQPTTVLADTISRFKIDQDVVEVIDK
AQADGNEALQARRVELFNARYQALQHSEHEWVRLFQQQYPGLPKSAVEQMLDRCGIAFTE
TPDAIEIKGVFRQLDGKARQYQQHVRLTRAYEGLYLRSVAHSDSDTLALHSLKNLPGWPK
GLRIEVLDGSLQGRVLDRCGSLEAADCRRLIKIGDHYQYVDVAAQAIAHADFYGAVIGVL
SADERAALQSLNPANELKLNLRDRTLSRAEFGLGLGRMDGGLPFEMQGLRGGGFPTTLQA
AALSHETMRLQVRDLYPDFGNAQADEWLQHAGASAQSRLDGLKQQSEQLSTDLTSWIDRS
LQDVDDMGIDFLAAGDEDAVGMTHAQIAAHNVALVQHAMELERETRIELADELISIWQKC
PPQANRLYSGEALAGYKLDLEFEDYHRLPIMNIKFNEVIELSMRGFHLTERESLNGFLES
FPNLRVLNLEKVDLRLSNTMGELESVLPPAIPRMSHLTTLNLKDTFLKFRENTASQLSDL
INLQSLDLSENPLSVSPVLLGMDNLREVNLRKTEISTCPIGIRDEPYLTSLDLRDNRITR
VPSAVLSQAIVRGRVQLWGNPLTDEDTLRRLISHRQRTGINLWLNAPGPGYGNPEAWLQQ
GEEALQQVRRTIWQQLAVKPSGSRFLRLIDGLSLTADFQVEYMALQARVWQLLSEAQASD
ELWSWLNRVVEATEVDAENPLGIFMSLEDRARLYRDWVAMGRPFPVITEQA