Protein Info for Pf1N1B4_5597 in Pseudomonas fluorescens FW300-N1B4

Annotation: FIG005548: transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 385 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 214 to 230 (17 residues), see Phobius details amino acids 237 to 259 (23 residues), see Phobius details amino acids 266 to 289 (24 residues), see Phobius details amino acids 301 to 327 (27 residues), see Phobius details amino acids 339 to 364 (26 residues), see Phobius details PF14870: PSII_BNR" amino acids 53 to 99 (47 residues), 32 bits, see alignment 8.3e-12 PF03176: MMPL" amino acids 173 to 365 (193 residues), 54.8 bits, see alignment E=7.6e-19

Best Hits

Predicted SEED Role

"FIG005548: transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (385 amino acids)

>Pf1N1B4_5597 FIG005548: transport protein (Pseudomonas fluorescens FW300-N1B4)
MVAQAATFAVLQQPALPAAKAARAVLLGLARAGERLVAVGERGIVLLSDDFGMTWRQARV
PVSVSLTAVQFVDAEQGWAVGHLGVVLHTEDGGETWHKQLDGERAAALAALSKIATAGYN
EGNFKWYELIPNDGALGAVQTRAPRELFNQGCSMLSLYVYLSDHKADTLNRVVQASEKFI
SEHQVPEVKFMLAAGSAGIEAATNIVVKKSMHEMLFWVYGAVSLLCLLTFRSWRATLCAM
LPLMLTSILCEALMVGLGMGVKVATLPVIALGVGIGIDYALYVLSVILARMRAGDTLAQA
YYQALLFTGKVVLLTGMTLAVAVSTWAFSPIKFQADMGILLAFMFLVNMLGALILLPALA
WLLLPQKVFAKKPEASLLVEWVKEG