Protein Info for Pf1N1B4_5459 in Pseudomonas fluorescens FW300-N1B4

Annotation: possible integrase-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 363 PF13495: Phage_int_SAM_4" amino acids 23 to 87 (65 residues), 29.1 bits, see alignment E=1.1e-10 PF00589: Phage_integrase" amino acids 153 to 313 (161 residues), 48.5 bits, see alignment E=8.7e-17

Best Hits

KEGG orthology group: None (inferred from 49% identity to avn:Avin_25710)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166QQ90 at UniProt or InterPro

Protein Sequence (363 amino acids)

>Pf1N1B4_5459 possible integrase-like protein (Pseudomonas fluorescens FW300-N1B4)
MSVHPDRGGDSHPAAAPLNGETLAEEYKQAGKSQNTDKAYSQAVDHFRDECHGFLPATEN
EIAEYIAKCAGKYSVSTIKLRLAGLSAWHKTVGFKDPTKSAHVKAVLRGIAKKHNKPPRE
ATPLPFDYLKQMVLRQEQLMAKARSDGDHAEYQRRSRDVALLLIGFWRGFRSDELCRLEA
QFITVYKGSRIEIYLPYSKTDNDGAGVTFSTAALKAFCPVQAYCRWIEDAGIATGPVFRA
IDRWGNFRETGVTGRSIGPILNGMVKDAGLDIHLSTHSLRRGFAKWAADHGWDVHSVMAY
VGWKNYESAKRYIPPRFSFGELSLDHSMSSLSNATVPTVIDASSVVAEAVKRGEMDNGSF
GAG