Protein Info for Pf1N1B4_5398 in Pseudomonas fluorescens FW300-N1B4

Annotation: Bll4347 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 511 PF00072: Response_reg" amino acids 224 to 333 (110 residues), 71.7 bits, see alignment E=5.7e-24 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 344 to 502 (159 residues), 135.3 bits, see alignment E=8.1e-44 PF00990: GGDEF" amino acids 350 to 499 (150 residues), 114.6 bits, see alignment E=3.9e-37

Best Hits

KEGG orthology group: None (inferred from 48% identity to pfs:pQBR0213)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166QNK9 at UniProt or InterPro

Protein Sequence (511 amino acids)

>Pf1N1B4_5398 Bll4347 protein (Pseudomonas fluorescens FW300-N1B4)
MKYDLNQILQTCWANNARNGMSPAGRAELRAVVGQVSEGITPEDINGRELVGQLERLLVG
EGNESSTEEAIANLLTQIAQEAVRNQNGRISDRGPQAVFLAGYGEQSSRVATYLIKMGMQ
LATFGHQQSIFEVMDVLTPAHMIVVGSCVLDDPEAIVAVRGFVGQEHSNRIIVLVADREL
SFDERRAAASIGKVWLFGPQDELKHVRDLIRSRNAESSIDGYKVLLVEDSRTDARVAQKI
MEAQGLVVHHIREPGQVLAAIQSFRPDVIISDLHMPGCKGDMMAKVIRQDRDATMPIVFL
SSESNEEAQLMALANGADGFVKKPLHPGAFIVALKSIITRSLALENRMRRDPLTNLLNHG
QFMETVRRCLAVAEPYALVTMDIDHFKSVNDTHGHPVGDRVLVSIGELLTDGLRASDFVG
RVGGEEFSVLMLGATPEQAVMIMNRLRERFSRIEHANDNGQSFRCTFSAGVTSLAGSVGE
SLRIADGALYQSKREGRNRVTLAGENEKSPD