Protein Info for Pf1N1B4_5280 in Pseudomonas fluorescens FW300-N1B4

Annotation: Nucleoid-associated protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 338 PF04245: NA37" amino acids 8 to 326 (319 residues), 277.9 bits, see alignment E=6.7e-87

Best Hits

Swiss-Prot: 82% identical to NDPA_PSEU2: Nucleoid-associated protein Psyr_1083 (Psyr_1083) from Pseudomonas syringae pv. syringae (strain B728a)

KEGG orthology group: K06899, nucleoid-associated protein (inferred from 82% identity to pba:PSEBR_a4565)

Predicted SEED Role

"Nucleoid-associated protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166QL42 at UniProt or InterPro

Protein Sequence (338 amino acids)

>Pf1N1B4_5280 Nucleoid-associated protein (Pseudomonas fluorescens FW300-N1B4)
MPIRHCTVHHIDKKPDGSPAILQTRDTELSESQAIDNMLADLNDAYNAKQGKAWGLFHAP
SGAHPFSNWLDDYLSSKTDFMPFTCRAVEHLQKLMEESNLSVGGHVLFAHYTQGMTDYLS
IALLHHSDGVCVSDELDVTPSKHLDLTQMHLAARINISEWKGNPKSRQYISFLKGKNGRK
VSEYFRDFIGCQEGVDGPGETRTLLKAFSDFVESEDLSEESSREKTHALVGYATAQGKLG
EPISLEELSELIDEERPKAFYDHIRNKDYGLSPEIPADKRTLNQFRRFTGRAEGLSISFE
AHLLGGKIEFDPEAGTLMIKGLPTQLTDQLKRVEASKG