Protein Info for Pf1N1B4_528 in Pseudomonas fluorescens FW300-N1B4

Annotation: sodium-solute symporter, putative

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 459 transmembrane" amino acids 6 to 23 (18 residues), see Phobius details amino acids 43 to 66 (24 residues), see Phobius details amino acids 72 to 90 (19 residues), see Phobius details amino acids 118 to 141 (24 residues), see Phobius details amino acids 149 to 170 (22 residues), see Phobius details amino acids 180 to 199 (20 residues), see Phobius details amino acids 219 to 238 (20 residues), see Phobius details amino acids 258 to 283 (26 residues), see Phobius details amino acids 307 to 328 (22 residues), see Phobius details amino acids 349 to 369 (21 residues), see Phobius details amino acids 375 to 396 (22 residues), see Phobius details amino acids 403 to 421 (19 residues), see Phobius details amino acids 431 to 449 (19 residues), see Phobius details PF00474: SSF" amino acids 32 to 412 (381 residues), 127 bits, see alignment E=4.6e-41

Best Hits

KEGG orthology group: K03307, solute:Na+ symporter, SSS family (inferred from 95% identity to pfo:Pfl01_1454)

Predicted SEED Role

"sodium-solute symporter, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166MPD5 at UniProt or InterPro

Protein Sequence (459 amino acids)

>Pf1N1B4_528 sodium-solute symporter, putative (Pseudomonas fluorescens FW300-N1B4)
MALDLFVVLIYAAAMLILGYYGMRKAKTNEDFLVAGRNLGPSLYMGTMAATVLGGASTVG
TVRLGYVHGISGFWLCAALGCGIVALNLFLAKPLLKLKIYTVTQVLEKRYNPMARSASAV
IMLAYALMIGVVSILAIGTVLQVLFDLPFWLSVLVGGGVVVIYSAIGGMWSLTLTDIVQF
VIKTVGLMFILLPICLYRVGGWDELVLKLPATAFSFTTIGWDTIITYFMIYFFGILIGQD
IWQRVFTVKSAKVAQVAGTFAGFYCILYGLACALIGMAAHVLIPDLDNVNNAFAAIVKLS
LPDGIRGLVIAAALAAMMSTASAGLLAASTTLTEDLLPKLRGGKQSSLAVNRLFTLLTGI
AVLGIALVVNDVISALTLAYNLLVGGMLIPLIGAIFWKRATTAGAIASMGMGFATALLFM
FKDGMDANTPIYYSLGVGLVSFVVVSLLSRRPAVVASAA