Protein Info for Pf1N1B4_527 in Pseudomonas fluorescens FW300-N1B4

Annotation: Cytosine/purine/uracil/thiamine/allantoin permease family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 503 transmembrane" amino acids 36 to 56 (21 residues), see Phobius details amino acids 63 to 85 (23 residues), see Phobius details amino acids 106 to 126 (21 residues), see Phobius details amino acids 147 to 169 (23 residues), see Phobius details amino acids 176 to 196 (21 residues), see Phobius details amino acids 211 to 233 (23 residues), see Phobius details amino acids 251 to 276 (26 residues), see Phobius details amino acids 298 to 320 (23 residues), see Phobius details amino acids 340 to 358 (19 residues), see Phobius details amino acids 364 to 388 (25 residues), see Phobius details amino acids 420 to 440 (21 residues), see Phobius details amino acids 454 to 474 (21 residues), see Phobius details PF02133: Transp_cyt_pur" amino acids 20 to 454 (435 residues), 168.2 bits, see alignment E=1.5e-53

Best Hits

KEGG orthology group: None (inferred from 93% identity to pfo:Pfl01_1455)

Predicted SEED Role

"Cytosine/purine/uracil/thiamine/allantoin permease family protein" in subsystem Purine Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166MPB7 at UniProt or InterPro

Protein Sequence (503 amino acids)

>Pf1N1B4_527 Cytosine/purine/uracil/thiamine/allantoin permease family protein (Pseudomonas fluorescens FW300-N1B4)
MNNNNKDQSLTQIETHGVEQIPDNERTAGPTDLFRMIFGGSNTFATAVLGSFPVLFGLSF
QAGVWAIVLGVLLGSLILAPMGLFGPINGTNNAVSSGAHFGVHGRIVGSFLSLLTAIAFF
SLSVWSSGDALIGGAKRLIGLPETDLTLGLAYGLFAILVLTVCIYGFRFLLWVNKIAVWS
ASLLFLLGIFAFAGPFDVNYAGSVSLGQPGFWAAFIGAALVAMSNPISFGAFLGDWSRYI
PRDTSKRRIMAAVVISQIATFIPFLFGLATATIVAIKAPDYIAANNYVGGLLAVSPSWFF
LPVCLIAVIGGMSTGTTSLYGTGLDMSSVFPRVLSRVKATLLIGVMSIAFIFIGRFAANL
VQSVSTFAVLIITCTTPWMVIMIIGLLVRRGFYCPDDLQVFTRGEKGGRYWFTHGWNWRG
LGAWIPSALVGLCFVNLPGQFVGPLGNLAGGIDISLPVTLGLASLVYLTLLSLFPEPAAV
FGPSDPRSKGKDSLGKPALRQAA